| General summary |
130622 |
171022 |
171022-141122 |
050123 |
| Average percent identity |
95.8 |
94.8 |
94.8 |
91.6 |
| Fraction of bases aligned |
0.9 |
0.9 |
0.8 |
0.7 |
| Mean read length |
3,369.4 |
11,053.2 |
11,018.4 |
10,563.6 |
| Mean read quality |
15.3 |
15.5 |
15.5 |
13.4 |
| Median percent identity |
97.3 |
96.8 |
96.8 |
95.8 |
| Median read length |
1,061.0 |
9,510.0 |
9,441.0 |
8,358.0 |
| Median read quality |
15.6 |
15.6 |
15.6 |
14.2 |
| Number of reads |
12,313,302.0 |
6,646,490.0 |
10,111,605.0 |
2,154,085.0 |
| Read length N50 |
12,929.0 |
15,057.0 |
15,150.0 |
11,328.0 |
| STDEV read length |
7,222.2 |
8,720.0 |
9,151.7 |
26,580.8 |
| Total bases |
41,488,443,419.0 |
73,465,082,897.0 |
111,413,949,987.0 |
22,754,922,097.0 |
| Total bases aligned |
39,062,012,918.0 |
62,559,852,557.0 |
93,786,820,202.0 |
15,950,338,333.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
|
|
|
| >Q5 |
12305442 (99.9%) 41487.2Mb |
6646490 (100.0%) 73465.1Mb |
10111605 (100.0%) 111413.9Mb |
2121772 (98.5%) 21719.7Mb |
| >Q7 |
12282516 (99.7%) 41469.8Mb |
6646490 (100.0%) 73465.1Mb |
10111605 (100.0%) 111413.9Mb |
1966521 (91.3%) 18755.2Mb |
| >Q10 |
11813080 (95.9%) 40869.5Mb |
6645754 (100.0%) 73464.4Mb |
10110235 (100.0%) 111412.7Mb |
1687563 (78.3%) 15845.0Mb |
| >Q12 |
10467994 (85.0%) 36984.0Mb |
5828688 (87.7%) 65005.5Mb |
8876103 (87.8%) 98821.7Mb |
1439182 (66.8%) 13483.6Mb |
| >Q15 |
7042213 (57.2%) 26794.1Mb |
3867525 (58.2%) 43981.9Mb |
5900576 (58.4%) 67061.4Mb |
900235 (41.8%) 8461.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
|
|
|
| 1 |
89.8 (1737; 906c0695-ed22-4509-8b59-ba47e66b3136) |
28.0 (1952; 53da8b79-e3ea-42a3-9791-742990fd42b6) |
28.0 (1952; 53da8b79-e3ea-42a3-9791-742990fd42b6) |
27.3 (154; 81517b8e-f7cd-42f4-853f-f0d2e81b38d9) |
| 2 |
89.7 (1203; 0eb51780-2efc-404d-8e21-769def1dc283) |
28.0 (178; b25023d0-125b-4072-b94e-a3079eaf0ac0) |
28.0 (178; b25023d0-125b-4072-b94e-a3079eaf0ac0) |
25.2 (2328; b5c7b676-a42a-4385-abd1-22e14c3ae89b) |
| 3 |
89.1 (692; 90bf0c58-a283-4a72-a117-8295dad2ca77) |
27.8 (1715; cb30cd2d-ba39-4397-9369-135e85727329) |
27.8 (1715; cb30cd2d-ba39-4397-9369-135e85727329) |
24.9 (2916; 73d057dd-e964-4db8-9282-134f78d193d2) |
| 4 |
57.5 (1756; 0eb51780-2efc-404d-8e21-769def1dc283) |
27.5 (160; db9b894a-a75d-42b0-a2f4-706bc12cc2cf) |
27.6 (338; 0c52f230-bd12-4df6-a45e-0ce7cbb90023) |
24.5 (4116; b5612ce0-fe7c-4c0d-a606-dd2086eb35da) |
| 5 |
57.4 (1751; 85ea0a7b-032e-4b93-bf8b-676e4673d1b1) |
27.4 (5330; 577071a2-320d-49b8-b4c2-c194c7de3494) |
27.5 (160; db9b894a-a75d-42b0-a2f4-706bc12cc2cf) |
24.3 (4758; 346a501a-e5f0-4fd1-b8e8-db5fbcd6d871) |
| Top 5 longest reads and their mean basecall quality score |
|
|
|
|
| 1 |
425894 (11.7; deb5b125-175d-425f-a823-af1bcf832e14) |
195745 (12.2; 43cd53c5-5374-401f-b26a-30b917de776d) |
810861 (24.2; 8da6d024-b59a-49ef-85b2-7b6389941102) |
1135170 (5.1; 02302b23-a34f-4b24-bfb1-c5a8444df072) |
| 2 |
185172 (14.4; 04665183-3cf4-4c3d-a54d-15e07eb703dd) |
195745 (12.2; 43cd53c5-5374-401f-b26a-30b917de776d) |
810861 (24.2; 8da6d024-b59a-49ef-85b2-7b6389941102) |
1135170 (5.1; 02302b23-a34f-4b24-bfb1-c5a8444df072) |
| 3 |
171682 (13.7; e120aaf0-8cae-4efd-beb3-28e43432f068) |
195745 (12.2; 43cd53c5-5374-401f-b26a-30b917de776d) |
810861 (24.2; 8da6d024-b59a-49ef-85b2-7b6389941102) |
1135170 (5.1; 02302b23-a34f-4b24-bfb1-c5a8444df072) |
| 4 |
171205 (13.8; eb3eb8ec-c57b-462f-b95a-3a368e032d99) |
195745 (12.2; 43cd53c5-5374-401f-b26a-30b917de776d) |
810861 (24.2; 8da6d024-b59a-49ef-85b2-7b6389941102) |
1135170 (5.1; 02302b23-a34f-4b24-bfb1-c5a8444df072) |
| 5 |
166842 (12.3; cd9f97d8-845e-4ad6-ae3e-de0ea71cae9e) |
195745 (12.2; 43cd53c5-5374-401f-b26a-30b917de776d) |
810861 (24.2; 8da6d024-b59a-49ef-85b2-7b6389941102) |
1135170 (5.1; 02302b23-a34f-4b24-bfb1-c5a8444df072) |