NanoComp report

Summary statistics

feature
General summary 130622 171022 171022-141122 050123
Average percent identity 95.8 94.8 94.8 91.6
Fraction of bases aligned 0.9 0.9 0.8 0.7
Mean read length 3,369.4 11,053.2 11,018.4 10,563.6
Mean read quality 15.3 15.5 15.5 13.4
Median percent identity 97.3 96.8 96.8 95.8
Median read length 1,061.0 9,510.0 9,441.0 8,358.0
Median read quality 15.6 15.6 15.6 14.2
Number of reads 12,313,302.0 6,646,490.0 10,111,605.0 2,154,085.0
Read length N50 12,929.0 15,057.0 15,150.0 11,328.0
STDEV read length 7,222.2 8,720.0 9,151.7 26,580.8
Total bases 41,488,443,419.0 73,465,082,897.0 111,413,949,987.0 22,754,922,097.0
Total bases aligned 39,062,012,918.0 62,559,852,557.0 93,786,820,202.0 15,950,338,333.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 12305442 (99.9%) 41487.2Mb 6646490 (100.0%) 73465.1Mb 10111605 (100.0%) 111413.9Mb 2121772 (98.5%) 21719.7Mb
>Q7 12282516 (99.7%) 41469.8Mb 6646490 (100.0%) 73465.1Mb 10111605 (100.0%) 111413.9Mb 1966521 (91.3%) 18755.2Mb
>Q10 11813080 (95.9%) 40869.5Mb 6645754 (100.0%) 73464.4Mb 10110235 (100.0%) 111412.7Mb 1687563 (78.3%) 15845.0Mb
>Q12 10467994 (85.0%) 36984.0Mb 5828688 (87.7%) 65005.5Mb 8876103 (87.8%) 98821.7Mb 1439182 (66.8%) 13483.6Mb
>Q15 7042213 (57.2%) 26794.1Mb 3867525 (58.2%) 43981.9Mb 5900576 (58.4%) 67061.4Mb 900235 (41.8%) 8461.9Mb
Top 5 highest mean basecall quality scores and their read lengths
1 89.8 (1737; 906c0695-ed22-4509-8b59-ba47e66b3136) 28.0 (1952; 53da8b79-e3ea-42a3-9791-742990fd42b6) 28.0 (1952; 53da8b79-e3ea-42a3-9791-742990fd42b6) 27.3 (154; 81517b8e-f7cd-42f4-853f-f0d2e81b38d9)
2 89.7 (1203; 0eb51780-2efc-404d-8e21-769def1dc283) 28.0 (178; b25023d0-125b-4072-b94e-a3079eaf0ac0) 28.0 (178; b25023d0-125b-4072-b94e-a3079eaf0ac0) 25.2 (2328; b5c7b676-a42a-4385-abd1-22e14c3ae89b)
3 89.1 (692; 90bf0c58-a283-4a72-a117-8295dad2ca77) 27.8 (1715; cb30cd2d-ba39-4397-9369-135e85727329) 27.8 (1715; cb30cd2d-ba39-4397-9369-135e85727329) 24.9 (2916; 73d057dd-e964-4db8-9282-134f78d193d2)
4 57.5 (1756; 0eb51780-2efc-404d-8e21-769def1dc283) 27.5 (160; db9b894a-a75d-42b0-a2f4-706bc12cc2cf) 27.6 (338; 0c52f230-bd12-4df6-a45e-0ce7cbb90023) 24.5 (4116; b5612ce0-fe7c-4c0d-a606-dd2086eb35da)
5 57.4 (1751; 85ea0a7b-032e-4b93-bf8b-676e4673d1b1) 27.4 (5330; 577071a2-320d-49b8-b4c2-c194c7de3494) 27.5 (160; db9b894a-a75d-42b0-a2f4-706bc12cc2cf) 24.3 (4758; 346a501a-e5f0-4fd1-b8e8-db5fbcd6d871)
Top 5 longest reads and their mean basecall quality score
1 425894 (11.7; deb5b125-175d-425f-a823-af1bcf832e14) 195745 (12.2; 43cd53c5-5374-401f-b26a-30b917de776d) 810861 (24.2; 8da6d024-b59a-49ef-85b2-7b6389941102) 1135170 (5.1; 02302b23-a34f-4b24-bfb1-c5a8444df072)
2 185172 (14.4; 04665183-3cf4-4c3d-a54d-15e07eb703dd) 195745 (12.2; 43cd53c5-5374-401f-b26a-30b917de776d) 810861 (24.2; 8da6d024-b59a-49ef-85b2-7b6389941102) 1135170 (5.1; 02302b23-a34f-4b24-bfb1-c5a8444df072)
3 171682 (13.7; e120aaf0-8cae-4efd-beb3-28e43432f068) 195745 (12.2; 43cd53c5-5374-401f-b26a-30b917de776d) 810861 (24.2; 8da6d024-b59a-49ef-85b2-7b6389941102) 1135170 (5.1; 02302b23-a34f-4b24-bfb1-c5a8444df072)
4 171205 (13.8; eb3eb8ec-c57b-462f-b95a-3a368e032d99) 195745 (12.2; 43cd53c5-5374-401f-b26a-30b917de776d) 810861 (24.2; 8da6d024-b59a-49ef-85b2-7b6389941102) 1135170 (5.1; 02302b23-a34f-4b24-bfb1-c5a8444df072)
5 166842 (12.3; cd9f97d8-845e-4ad6-ae3e-de0ea71cae9e) 195745 (12.2; 43cd53c5-5374-401f-b26a-30b917de776d) 810861 (24.2; 8da6d024-b59a-49ef-85b2-7b6389941102) 1135170 (5.1; 02302b23-a34f-4b24-bfb1-c5a8444df072)

Plots

Comparing number of reads

Comparing throughput in bases

Comparing read length N50

Comparing read length

Comparing log-transformed read length

Comparing average base call quality score

Comparing percent reference identity

Histogram of percent reference identity

Histogram of Phred scores

Histogram of read lengths

Normalized histogram of read lengths

Histogram of log transformed read lengths

Normalized histogram of log transformed read lengths